Priorities for ocean microbiome research

Andre Abreu; Etienne Bourgois; Adam Gristwood; Romain Troublé; Silvia G. Acinas; Peer Bork; Emmanuel Boss; Chris Bowler; Marko Budinich; Samuel Chaffron; Vargas C de; Tom O. Delmont; Damien Eveillard; Lionel Guidi; Daniele Iudicone; Stephanie Kandels; Hélène Morlon; Fabien Lombard; Rainer Pepperkok; Juan José Pierella Karlusich; Gwenael Piganeau; Antoine Régimbeau; Guilhem Sommeria-Klein; Lars Stemmann; Matthew B. Sullivan; Shinichi Sunagawa; Patrick Wincker; Olivier Zablocki; Detlev Arendt; Josipa Bilic; Robert Finn; Edith Heard; Brendan Rouse; Jessica Vamathevan; Raffaella Casotti; Ibon Cancio; Michael Cunliffe; Anne Emmanuelle Kervella; Wiebe H.C.F. Kooistra; Matthias Obst; Nicolas Pade; Deborah M. Power; Ioulia Santi; Tatiana Margo Tsagaraki; Jan Vanaverbeke

doi:10.1038/s41564-022-01145-5

Priorities for ocean microbiome research

Andre Abreu, Etienne Bourgois, Adam Gristwood, Romain Troublé, Silvia G. Acinas, Peer Bork, Emmanuel Boss, Chris Bowler^*, Marko Budinich, Samuel Chaffron, Vargas C de, Tom O. Delmont, Damien Eveillard, Lionel Guidi, Daniele Iudicone, Stephanie Kandels, Hélène Morlon, Fabien Lombard, Rainer Pepperkok, Juan José Pierella KarlusichGwenael Piganeau, Antoine Régimbeau, Guilhem Sommeria-Klein, Lars Stemmann, Matthew B. Sullivan, Shinichi Sunagawa, Patrick Wincker, Olivier Zablocki, Detlev Arendt, Josipa Bilic, Robert Finn, Edith Heard, Brendan Rouse, Jessica Vamathevan, Raffaella Casotti, Ibon Cancio, Michael Cunliffe, Anne Emmanuelle Kervella, Wiebe H.C.F. Kooistra, Matthias Obst, Nicolas Pade, Deborah M. Power, Ioulia Santi, Tatiana Margo Tsagaraki, Jan Vanaverbeke

^*Corresponding author for this work

School of Biological and Marine Sciences

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Abstract

Microbial communities have essential roles in ocean ecology and planetary health. Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air and support ocean food webs. The taxonomic and functional diversity of the global ocean microbiome has been revealed by technological advances in sampling, DNA sequencing and bioinformatics. A better understanding of the ocean microbiome could underpin strategies to address environmental and societal challenges, including achievement of multiple Sustainable Development Goals way beyond SDG 14 'life below water'. We propose a set of priorities for understanding and protecting the ocean microbiome, which include delineating interactions between microbiota, sustainably applying resources from oceanic microorganisms and creating policy- and funder-friendly ocean education resources, and discuss how to achieve these ambitious goals.

Original language	English
Pages (from-to)	937-947
Number of pages	0
Journal	Nature Microbiology
Volume	7
Issue number	7
Early online date	30 Jun 2022
DOIs	https://doi.org/10.1038/s41564-022-01145-5
Publication status	Published - 30 Jun 2022

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This output contributes to the following UN Sustainable Development Goals (SDGs)

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Abreu, A., Bourgois, E., Gristwood, A., Troublé, R., Acinas, S. G., Bork, P., Boss, E., Bowler, C., Budinich, M., Chaffron, S., de, V. C., Delmont, T. O., Eveillard, D., Guidi, L., Iudicone, D., Kandels, S., Morlon, H., Lombard, F., Pepperkok, R., ... Vanaverbeke, J. (2022). Priorities for ocean microbiome research. Nature Microbiology, 7(7), 937-947. https://doi.org/10.1038/s41564-022-01145-5

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abstract = "Microbial communities have essential roles in ocean ecology and planetary health. Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air and support ocean food webs. The taxonomic and functional diversity of the global ocean microbiome has been revealed by technological advances in sampling, DNA sequencing and bioinformatics. A better understanding of the ocean microbiome could underpin strategies to address environmental and societal challenges, including achievement of multiple Sustainable Development Goals way beyond SDG 14 'life below water'. We propose a set of priorities for understanding and protecting the ocean microbiome, which include delineating interactions between microbiota, sustainably applying resources from oceanic microorganisms and creating policy- and funder-friendly ocean education resources, and discuss how to achieve these ambitious goals.",

author = "Andre Abreu and Etienne Bourgois and Adam Gristwood and Romain Troubl{\'e} and Acinas, {Silvia G.} and Peer Bork and Emmanuel Boss and Chris Bowler and Marko Budinich and Samuel Chaffron and de, {Vargas C} and Delmont, {Tom O.} and Damien Eveillard and Lionel Guidi and Daniele Iudicone and Stephanie Kandels and H{\'e}l{\`e}ne Morlon and Fabien Lombard and Rainer Pepperkok and Karlusich, {Juan Jos{\'e} Pierella} and Gwenael Piganeau and Antoine R{\'e}gimbeau and Guilhem Sommeria-Klein and Lars Stemmann and Sullivan, {Matthew B.} and Shinichi Sunagawa and Patrick Wincker and Olivier Zablocki and Detlev Arendt and Josipa Bilic and Robert Finn and Edith Heard and Brendan Rouse and Jessica Vamathevan and Raffaella Casotti and Ibon Cancio and Michael Cunliffe and Kervella, {Anne Emmanuelle} and Kooistra, {Wiebe H.C.F.} and Matthias Obst and Nicolas Pade and Power, {Deborah M.} and Ioulia Santi and Tsagaraki, {Tatiana Margo} and Jan Vanaverbeke",

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Abreu, A, Bourgois, E, Gristwood, A, Troublé, R, Acinas, SG, Bork, P, Boss, E, Bowler, C, Budinich, M, Chaffron, S, de, VC, Delmont, TO, Eveillard, D, Guidi, L, Iudicone, D, Kandels, S, Morlon, H, Lombard, F, Pepperkok, R, Karlusich, JJP, Piganeau, G, Régimbeau, A, Sommeria-Klein, G, Stemmann, L, Sullivan, MB, Sunagawa, S, Wincker, P, Zablocki, O, Arendt, D, Bilic, J, Finn, R, Heard, E, Rouse, B, Vamathevan, J, Casotti, R, Cancio, I, Cunliffe, M, Kervella, AE, Kooistra, WHCF, Obst, M, Pade, N, Power, DM, Santi, I, Tsagaraki, TM & Vanaverbeke, J 2022, 'Priorities for ocean microbiome research', Nature Microbiology, vol. 7, no. 7, pp. 937-947. https://doi.org/10.1038/s41564-022-01145-5

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AU - Abreu, Andre

AU - Bourgois, Etienne

AU - Gristwood, Adam

AU - Troublé, Romain

AU - Acinas, Silvia G.

AU - Bork, Peer

AU - Boss, Emmanuel

AU - Bowler, Chris

AU - Budinich, Marko

AU - Chaffron, Samuel

AU - de, Vargas C

AU - Delmont, Tom O.

AU - Eveillard, Damien

AU - Guidi, Lionel

AU - Iudicone, Daniele

AU - Kandels, Stephanie

AU - Morlon, Hélène

AU - Lombard, Fabien

AU - Pepperkok, Rainer

AU - Karlusich, Juan José Pierella

AU - Piganeau, Gwenael

AU - Régimbeau, Antoine

AU - Sommeria-Klein, Guilhem

AU - Stemmann, Lars

AU - Sullivan, Matthew B.

AU - Sunagawa, Shinichi

AU - Wincker, Patrick

AU - Zablocki, Olivier

AU - Arendt, Detlev

AU - Bilic, Josipa

AU - Finn, Robert

AU - Heard, Edith

AU - Rouse, Brendan

AU - Vamathevan, Jessica

AU - Casotti, Raffaella

AU - Cancio, Ibon

AU - Cunliffe, Michael

AU - Kervella, Anne Emmanuelle

AU - Kooistra, Wiebe H.C.F.

AU - Obst, Matthias

AU - Pade, Nicolas

AU - Power, Deborah M.

AU - Santi, Ioulia

AU - Tsagaraki, Tatiana Margo

AU - Vanaverbeke, Jan

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AB - Microbial communities have essential roles in ocean ecology and planetary health. Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air and support ocean food webs. The taxonomic and functional diversity of the global ocean microbiome has been revealed by technological advances in sampling, DNA sequencing and bioinformatics. A better understanding of the ocean microbiome could underpin strategies to address environmental and societal challenges, including achievement of multiple Sustainable Development Goals way beyond SDG 14 'life below water'. We propose a set of priorities for understanding and protecting the ocean microbiome, which include delineating interactions between microbiota, sustainably applying resources from oceanic microorganisms and creating policy- and funder-friendly ocean education resources, and discuss how to achieve these ambitious goals.

U2 - 10.1038/s41564-022-01145-5

DO - 10.1038/s41564-022-01145-5

M3 - Article

SN - 2058-5276

VL - 7

SP - 937

EP - 947

JO - Nature Microbiology

JF - Nature Microbiology

IS - 7

ER -

Priorities for ocean microbiome research

Abstract

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